ADD_BEND
- NAME
ADD_BEND - Add the bending angle between three atoms to the
list of the reaction coordinates.
- SYNOPSIS
ADD_BEND iat1 iat2 iat3 w
- DESCRIPTION
This command adds to the list of the reaction
coordinates of a metadynamics simulation the bending angle between atom
iat1, iat2 and iat3. The central atom of the
bending is iat2. The numeric order of the atom
indices iat1, iat2, iat3 is that specified in the topology file
(see 10.3). The repulsive potential terms deposed in the
space of the reaction coordinates during the simulation (see
6.3.3) will have a width w (in arc degrees) in the
direction of this angle.
- EXAMPLES
ADD_BEND 1 7 12 4.0
Add the bending angle between atom 1, atom 7 and atom 12 to the list of the
reaction coordinates.
procacci
2021-12-29