SYNOPSIS
bonds
...
lab1 lab2 lab3 lab4 ... ...
end
DESCRIPTION
The keyword is used to define a list of covalent
bonds among the atoms forming the residue. The list is terminated by
end. On the lines following bonds a series of pairs of
atom labels is expected. In the synopsis, atom lab1 is
covalently bound to atom lab2 and lab3 to lab4. The labels appearing in input to bonds must be
defined in the atom list given with the command atoms.
EXAMPLES
bonds
n ca o c c ca ca ha
cg2 hg22 cg2 hg23
end
WARNINGS
The keyword atoms must appear before bonds.
