- NAME
UPDATE - Assign parameters for the computation of the Verlet neighbor list
- SYNOPSIS
UPDATE fupdte rspcut
- DESCRIPTION
ORAC computes Verlet neighbor lists
the atomic groups of both the solvent and solute. There exist
three different neighbor lists: a solvent-solvent, a solute-solute
and a solvent-solute list. During the run, the calculation is
carried out with a frequency equal to fupdte fs. All the
group-group interactions within a radial cutoff of
are included in the neighbor lists. The dimensions of the
three lists are printed at run time. In the ORAC output nnlww,
nnlpp and nnlpw refers to the solvent-solvent, solute-solute
and solute-solvent neighbor list.
The current version of ORAC can also use linked cell
in place of the conventional Verlet neighbor list (see command
LINKED_CELL).
- EXAMPLES
UPDATE 65.0 1.4
Update the neighbor lists every 65.0 fs and use a cutoff of
Å.
- DEFAULTS
UPDATE 100.0 1.0
- WARNINGS
The neighbor list cutoff must not be chosen larger than half of the
simulation box size. The calculation of the neighbor list is
performed by default. Only for solvent-only simulations, if the radial
cutoff is equal to half of the box size, the force calculation is
carried out without the use of neighbor list. When using r-RESPA
the value of rspcut is ignored in the UPDATE directive and
is taken as an argument of the last step nonbond command
in the MTS_RESPA structured command.
procacci
2021-12-29